Papers

Mohammadreza Ghodsi, Bo Liu, Mihai Pop. DNACLUST: accurate and efficient clustering of phylogenetic marker genes BMC Bioinformatics 2011,12:271

Bo Liu, Theodore Gibbons, Mohammad Ghodsi, Todd Treangen, Mihai Pop. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. BMC Genomics 2011, 12(Suppl 2):S4

Bo Liu, Mihai Pop. MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets. BMC Proceedings 2011, 5(Suppl 2):S9

Bo Liu, Theodore Gibbons, Mohammadreza Ghodsi, Mihai Pop. MetaPhyler: Taxonomic profiling for metagenomic sequences. Proceedings of 2010 IEEE Bioinformatics and Biomedicine:95-100.

Bo Liu, Mihai Pop:Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets. Lect Notes Comput Sci 2010, 6053: 101-112

Bo Liu, Mihai Pop. ARDB - Antibiotic Resistance Genes Database. Nucleic Acids Res. 2009 Jan;37(Database issue):D443-7.

Presentations

Estimating microbial compositions from metagenomic shotgun sequences. IEEE BIBM, Hong Kong, December 2010.

Statistical methods for comparing the abundances of metabolic pathways in metagenomics. Beyond the Genome Conference, Harvard Medical School, Boston, MA, October 2010.

MetaPath: discovering metabolic pathway signatures in metagenomics. Maryland Pathogen Research Institute, University of Maryalnd, College Park, MD. June 2010.

Identifying Differentially Abundant Metabolic Pathways in Metagenomics. International Symposium on Bioinformatics Research and Applications, University of Connecticut, CT. May 2010.

Antibiotic Resistance Genes Database and Evolution of Resistance Genes in Staphylococcus aureus genomes. CBCB Seminars, University of Maryland, College Park, MD, October, 2008

Posters

Treangen TJ, Koren S, Astrovskaya I, Sommer D, Liu B, Pop M. MetAMOS: a metagenomic assembly pipeline for AMOS. Beyond the Genome, Washington DC, September 2011.

Astrovskaya I, Liu B, Pop M. Viral diversity in children with diarrhea in Gambia. Beyond the Genome, Washington DC, September 2011.

Kelley DR, Liu B, Arthur L. Delcher, Mihai Pop, Steven L. Salzberg. Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering . The Biology of Genomes, Cold Spring Harbor Laboratory, NY. May 2011.

Liu B, Treangen TJ, Pop M. Comparative assembly for metagenomic sequences. International Human Microbiome Research Conference, Vancouver, March 2011.

Thompson B, Liu B, Grebenok R, Adams S, Suen G, Haapala E, Currie C, Gruner D. Utilization of a nutritionally refractive food source by the European woodwasp, Sirex noctilio, and its microbial symbiont community. ESA 58th, San Diego, December 2010.

Liu B, Gibbons T, Ghodsi M, Pop M. MetaPhyler: Taxonomic Profiling for Metagenomic Sequences. Human Microbiome Research Conference, St Louis, September 2010.

Ghodsi M, Liu B, Pop M. DNACLUST: Efficient clustering of large numbers of DNA sequences. Human Microbiome Research Conference, St Louis, September 2010.

Liu B, Pop M. Identifying Differentially Abundant Metabolic Pathways in Metagenomics. International Symposium on Bioinformatics Research and Applications, University of Connecticut, CT. May 2010. (Best poster award)

Phillippy AM, Schatz MC, Chabuk T, Liu B, Patro R, Salzberg S. Improving the genome sequence of D. simulans via co-assembly of multiple strains. The Biology of Genomes, Cold Spring Harbor Laboratory, NY. May 2009.

Liu B, Pop M. ARDB-Antibiotic Resistance Genes Database. The Biology of Genomes, Cold Spring Harbor Laboratory, NY. May 2008.