1067 Evans Hall
Department of Mathematics
University of California, Berkeley
Berkeley, CA, 94720
(Visiting until 8/2009)

cole AT cs dot umd dot edu

News

October 27, 2008
TopHat, my software for identifying exon-exon splice junctions from RNA-Seq data, is now available.

August 30, 2008
I have successfully moved to UC Berkeley. I'll be a visiting student until August 2009, working with Lior Pachter on applications and algorithms for short read alignment.

August 14, 2008
Ben Langmead and I just released our ultrafast short read mapping program, Bowtie.

January 7, 2008
My first ever RC airplane flight was a success!

December 18, 2007
I finally have videos up on from my Summer 2007 rocket launch.

December 10, 2007
My paper with Mike Schatz about our program MUMmerGPU was accepted to BMC Bioinformatics.