Recommended Textbooks

• Computational Phylogenetics (Warnow, 2017) [CUP]
• Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids (Durbin, Eddy, Krogh, Mitchinson, 1998) [CUP] [Also]

Slides and/or Lecture Notes from

• Tandy Warnow
• Luay Nakhleh
• Siavash Mirarab
• Ron Shamir

Review Papers

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Phylogenetics Textbooks

• Phylogenetics (Semple and Steel, 2003) [OUP]
• Basic Phylogenetic Combinatorics (Dress, Huber, Koolen, Moulton, Spillner, 2012) [CUP] [UMD Library]
• Phylogenetics: Discrete and Random Processes in Evolution (Steel, 2016) [CUP]
• Phylogenetics in the Genomic Era [Open Access]

Population Genetics Textbooks

• Population Genetics Notes (Coop) [Github]
• Statistical Population Genomics [Open Access]

Probability and Statistics Textbooks

• All of Statistics (Wasserman, 2004) [Springer] [Also]
• An Introduction to Probability Models, Eleventh Edition (Ross, 2014) [Elsevier] [Also]

Basic Computer Science and Programming Textbooks

• Data Structures and Algorithms in Python (Goodrich, Tamassia, Goldwasser, 2013) [Wiley] [Also]
• Data Structures: An Active Learning Approach (Moshiri, Alvarado, Izhikevich, 2018) [edX]