Journal Publications of Dianne P. O'Leary

  • [J86] Bert W. Rust and Dianne P. O'Leary, ``Residual Periodograms for Choosing Regularization Parameters for Ill-Posed Problems", Inverse Problems, to appear. pdf preprint
  • [J85] Julianne Chung, James G. Nagy, and Dianne P. O'Leary, ``A Weighted GCV Method for Lanczos Hybrid Regularization," Electronic Transactions on Numerical Analysis, 28 (2008) 149-167. pdf reprint
  • [J84] Elena Zotenko, Rezarta Islamaj Dogan, W. John Wilbur, Dianne P. O'Leary and Teresa M. Przytycka, ``Structural Footprinting in Protein Structure Comparison: The Impact of Structural Fragments," BMC Structural Biology, 7:53 (2007) {DOI:10.1186/1472-6807-7-53}. pdf reprint
  • [J83] Haw-ren Fang and Dianne P. O'Leary, ``Modified Cholesky Algorithms: A Catalog with New Approaches," Mathematical Programming A, (2007) DOI:10.1007/s10107-007-0177-6 2006 technical report
  • [J82] Daniel M. Dunlavy, Dianne P. O'Leary, John M. Conroy, and Judith D. Schlesinger, ``QCS: A System for Querying, Clustering, and Summarizing Documents," Information Processing & Management 43:6 (2007), 1588--1605. DOI:10.1016/j.ipm.2007.01.003. 2006 technical report
  • [J81] Dianne P. O'Leary, Zdenek Strakos, and Petr Tichy, ``On Sensitivity of Gauss-Christoffel Quadrature," Numerische Mathematik, 107 (2007) 147--174. DOI:10.1007/s00211-007-0078-x http://www.springerlink.com.
  • [J80] Nicola Mastronardi and Dianne P. O'Leary, ``Fast Robust Regression Algorithms for Problems with Toeplitz Structure," Computational Statistics and Data Analysis, (2007) 52:2, pp. 1119--1131. DOI:10.1016/j.csda.2007.05.008
  • [J79] Simon P. Schurr, Andre' L. Tits, and Dianne P. O'Leary, ``Universal Duality in Conic Convex Optimization," Mathematical Programming A, 109, No. 1 (2007) pp. 69-88. DOI: 10.1007/s10107-005-0690-4 link to Mathematical Programming A
  • [J78] Dianne P. O'Leary, Gavin K. Brennen, and Stephen S. Bullock, ``Parallelism for Quantum Computation with Qudits," Physical Review A, (2006) 74:3, doi:10.1103/PhysRevA.74.032334
  • [J77] Haw-ren Fang and Dianne P. O'Leary, ``Stable Factorizations of Symmetric Tridiagonal and Triadic Matrices," SIAM J. on Matrix Analysis and Applications, 28 (2006), pp. 576-595.
  • [J76] Elena Zotenko, Dianne P. O'Leary, and Teresa M. Przytycka, ``Secondary Structure Spatial Conformation Footprint: A Novel Method for Fast Protein Structure Comparison," BMC Structural Biology, (2006), 6:12, abstract and full text
  • [J75] Gavin K. Brennen, Stephen S. Bullock, and Dianne P. O'Leary, ``Efficient Circuits for Exact-Universal Computation with Qudits," Quantum Information and Computation, 6 (2006), 436-454.
  • [J74] Anoop Kalsi and Dianne P. O'Leary, ``Algorithms for Structured Total Least Squares Problems with Applications to Blind Image Deblurring," Journal of Research of the National Institute of Standards and Technology, 111, No. 2 (2006) pp. 113-119. full text
  • [J73] Daniel M. Dunlavy, Dianne P. O'Leary, Dmitri Klimov, and D. Thirumalai, ``HOPE: A Homotopy Optimization Method for Protein Structure Prediction," Journal of Computational Biology, 12, No. 10 (2005), pp. 1275-1288.
  • [J72] Dianne P. O'Leary and Stephen S. Bullock, ``QR Factorizations Using a Restricted Set of Rotations," Electronic Transactions on Numerical Analysis, 21 (2005) pp. 20-27. link to ETNA
  • [J71] Stephen S. Bullock, Dianne P. O'Leary, and Gavin K. Brennen, ``Asymptotically optimal quantum circuits for $d$-level systems," Physical Review Letters, 94, no 23 (2005) 230502, 4 pages. http://xxx.lanl.gov/abs/quant-ph/0410116
  • [J70] Gavin K. Brennen, Dianne P. O'Leary, and Stephen S. Bullock, ``Criteria for Exact Qudit Universality," Physical Review A 71, 052318 (2005) 7 pages. http://xxx.lanl.gov/abs/quant-ph/0407223
  • [J69] Stephen S. Bullock, Gavin K. Brennen, and Dianne P. O'Leary, ``Time reversal and $n$-qubit Canonical Decompositions," Journal of Mathematical Physics 46, 062104 (2005) 18 pages. http://xxx.lanl.gov/abs/quant-ph/0402051
  • [J68] Howard C. Elman, Oliver G. Ernst, Dianne P. O'Leary, and Michael Stewart, ``Efficient Iterative Algorithms for the Stochastic Finite Element Method with Application to Acoustic Scattering," Computer Methods in Applied Mechanics and Engineering, 194 (2005) 1037-1055. http://authors.elsevier.com/sd/article/S0045782504003123
  • [J67] Nicola Mastronardi, Phillip Lemmerling, Anoop Kalsi, Dianne O'Leary, and Sabine Van Huffel, ``Regularized structured total least squares algorithms for blind image deblurring," Linear Algebra and Its Applications, 391 (2004) 203-221
  • [J66] David E. Gilsinn, Geraldine S. Cheok, and Dianne P. O'Leary, ``Reconstructing Images of Bar Codes for Construction Site Object Recognition," Automation in Construction (Elsevier), 13 (2004) 21-35.
  • [J65] Dianne P. O'Leary, ``Scaling Symmetric Positive Definite Matrices to Prescribed Row Sums", Linear Algebra and Its Applications, 370 (2003) 185-191. pdf
  • [J64] Ilya Zavorin, Dianne P. O'Leary, and Howard Elman, ``Complete Stagnation of GMRES," Linear Algebra and Its Applications, 367 (2003) 165-183. pdf
  • [J63] Armin Pruessner and Dianne P. O'Leary, ``Blind Deconvolution Using a Regularized Structured Total Least Norm Approach," SIAM J. on Matrix Analysis and Applications, 24 (2003) 1018-1037. http://epubs.siam.org/sam-bin/dbq/article/39544 pdf
  • [J62] Judith D. Schlesinger, John M. Conroy, Mary Ellen Okurowski, and Dianne P. O'Leary, ``Machine and Human Performance for Single- and Multi-Document Summarization," IEEE Intelligent Systems (special issue on Natural Language Processing) 18(1), 2003, 46-54. http://csdl.computer.org/comp/mags/ex/2003/01/x1toc.htm pdf
  • [J61] James G. Nagy and Dianne P. O'Leary, ``Image Restoration through Subimages and Confidence Images," Electronic Transactions on Numerical Analysis, 13 (2002) 22-37. http://etna.mcs.kent.edu/ pdf
  • [J60] Howard C. Elman, Oliver G. Ernst, and Dianne P. O'Leary, ``A Multigrid Method Enhanced by Krylov Subspace Iteration for Discrete Helmholtz Equations," SIAM J. on Scientific Computing, 23 (2001) 1291-1315. http://epubs.siam.org/sam-bin/dbq/article/35719 pdf
  • [J59] Dianne P. O'Leary, ``Near-Optimal Parameters for Tikhonov and Other Regularization Methods," SIAM J. on Scientific Computing, 23 (2001) 1161-1171. http://epubs.siam.org/sam-bin/dbq/article/35414 pdf
  • [J58] Isabel Beichl, Dianne P. O'Leary, and Francis Sullivan, ``Approximating the Number of Monomer-Dimer Coverings in Periodic Lattices," Physical Review E 64 (2001) 016701.1-6. pdf
  • [J57] Misha E. Kilmer and Dianne P. O'Leary, ``Choosing Regularization Parameters in Iterative Methods for Ill-Posed Problems," SIAM J. on Matrix Analysis and Applications, 22 (2001) 1204-1221. http://epubs.siam.org/sam-bin/dbq/article/34596 pdf
  • [J56] Tamara G. Kolda and Dianne P. O'Leary, ``Computation and Uses of the Semidiscrete Matrix Decomposition," ACM Transactions on Mathematical Software, 26 (2000) 415-435. http://portal.acm.org/citation.cfm?doid=358407.358424 pdf
  • [J55] Weichung Wang and Dianne P. O'Leary, ``Adaptive Use of Iterative Methods in Predictor-Corrector Interior Point Methods for Linear Programming," Numerical Algorithms, (special issue honoring Richard Varga), 25 (2000) 387-406. www.baltzer.nl pdf
  • [J54] Dianne P. O'Leary, ``Symbiosis between Linear Algebra and Optimization," invited paper, J. of Computational and Applied Math. 123 (2000) 447-465; reprinted in a book Numerical Analysis 2000. pdf
  • [J53] John M. Conroy, Tamara G. Kolda, Dianne P. O'Leary, and Timothy J. O'Leary, ``Chromosome Identification Using Hidden Markov Models: Comparison with Neural Network, Singular Value Decomposition, Principal Components Analysis, and Fisher Discriminant Analysis," Laboratory Investigation, 80 (2000) 1629-1641. pdf
  • [J52] Howard C. Elman and Dianne P. O'Leary, ``Eigenanalysis of Some Preconditioned Helmholtz Problems," Numerische Mathematik, 83 (1999) 231-257. pdf
  • [J51] Gene H. Golub, Per Christian Hansen, Dianne P. O'Leary, ``Tikhonov Regularization and Total Least Squares," SIAM Journal on Matrix Analysis and Applications, 21 (1999) 185-194. http://epubs.siam.org/sam-bin/dbq/article/32643 pdf
  • [J50] Misha E. Kilmer and Dianne P. O'Leary, ``Pivoted Cauchy-Like Preconditioners for Regularized Solution of Ill-Posed Problems," SIAM Journal on Scientific Computing, 21 (1999) 88-110. http://epubs.siam.org/sam-bin/dbq/article/30897 pdf
  • [J49] Dianne P. O'Leary and G. W. Stewart, ``On the Convergence of a New Rayleigh Quotient Method with Applications to Large Eigenproblems," Electronic Transactions on Numerical Analysis, 7 (1998), 182-189. http://etna.mcs.kent.edu/ pdf
  • [J48] Tamara G. Kolda and Dianne P. O'Leary, ``A Semi-Discrete Matrix Decomposition for Latent Semantic Indexing in Information Retrieval," ACM Transactions on Information Systems, 16 (1998) 322-346. pdf
  • [J47] Tamara Kolda, Dianne P. O'Leary, and Larry Nazareth, ``BFGS with Update Skipping and Varying Memory," SIAM Journal on Optimization, 8 (1998) 1060-1083. http://epubs.siam.org/sam-bin/dbq/article/30645 pdf
  • [J46] Howard C. Elman and Dianne P. O'Leary ``Efficient Iterative Solution of the Three-Dimensional Helmholtz Equation," Journal of Computational Physics, 142 (1998) 163-181. pdf
  • [J45] James G. Nagy and Dianne P. O'Leary, ``Restoring Images Degraded by Spatially-Variant Blur," SIAM Journal on Scientific Computing, 19 (1998), 1063-1082. http://epubs.siam.org/sam-bin/dbq/article/28507 pdf
  • [J44] Daniel P. Heyman and Dianne P. O'Leary, ``Overcoming instability in computing the fundamental matrix for a Markov chain," SIAM Journal on Matrix Analysis and Applications, 19 (1998) 534-540. http://epubs.siam.org/sam-bin/dbq/article/30175 pdf
  • [J43] Ricardo Fierro, Gene H. Golub, Per Christian Hansen, and Dianne P. O'Leary, ``Regularization by Truncated Total Least Squares,'' SIAM Journal on Scientific Computing, 18 (1997) 1223-1241. http://epubs.siam.org/sam-bin/dbq/article/26383 pdf
  • [J42] Dianne P. O'Leary and Yuan-Jye Jason Wu, ``A Block-GTH Algorithm for Finding the Stationary Vector of a Markov Chain," SIAM Journal on Matrix Applications, 17 (1996) 470-488. http://epubs.siam.org/sam-bin/dbq/article/26253 pdf
  • [J41] Dianne P. O'Leary, ``Why Broyden's nonsymmetric method terminates on linear equations,'' SIAM Journal on Optimization, 5 (1995) 231-235. pdf
  • [J40] K. J. Ray Liu, Dianne P. O'Leary, G. W. Stewart, and Yuan-Jye J. Wu, ``URV ESPRIT for tracking time-varying signals,'' IEEE Transactions on Signal Processing, 42 (1994) 3441-3448. pdf
  • [J39] Dianne P. O'Leary and A. Yeremin, ``The linear algebra of block quasi-Newton algorithms,'' Linear Algebra and Its Applications, 212/213 (1994) 153-168. pdf
  • [J38] Bert W. Rust and Dianne P. O'Leary, ``Confidence intervals for discrete approximations to ill-posed problems,'' The Journal of Computational and Graphical Statistics, 3 (1994) 67-96. pdf
  • [J37] Per Christian Hansen and Dianne P. O'Leary, ``The use of the L-curve in the regularization of discrete ill-posed problems,'' SIAM Journal on Scientific Computing 14 (1993) 1487-1503. pdf
  • [J36] Chiou-Ming Huang and Dianne P. O'Leary, ``A Krylov multisplitting algorithm for solving linear systems of equations,'' Linear Algebra and Its Applications, 194 (1993) 9-29. pdf (part 1) and pdf (part 2)
  • [J35] Moghen M. Monahemi, Jewel B. Barlow and Dianne P. O'Leary, ``The design of reduced order observers with precise loop transfer recovery,'' AIAA Journal of Guidance, Control, and Dynamics 15 (1992) 1320-1326 pdf (part 1) and pdf (part 2)
  • [J34] Jewel B. Barlow, Moghen M. Monahemi, and Dianne P. O'Leary, ``Constrained matrix Sylvester equations,'' SIAM Journal on Matrix Analysis and Applications, 13 (1992) 1-9. pdf
  • [J33] Dianne P. O'Leary, ``Yet another polynomial preconditioner for the conjugate gradient algorithm,'' Linear Algebra and Its Applications, 154 (1991) 377-388. pdf
  • [J32] Dianne P. O'Leary and Peter Whitman, ``Parallel QR factorization by Householder and modified Gram-Schmidt algorithms,'' Parallel Computing 16 (1990) 99-112. pdf
  • [J31] Dianne P. O'Leary and G.W. Stewart, ``Computing the eigenvalues and eigenvectors of symmetric arrowhead matrices,'' Journal of Computational Physics 90 (1990) 497-505. pdf
  • [J30] Dianne P. O'Leary, ``Robust regression computation using iteratively reweighted least squares,'' SIAM Journal of Matrix Analysis and Applications 11 (1990) 466-480. pdf
  • [J29] Dianne P. O'Leary, ``On bounds for scaled projections and pseudoinverses,'' Linear Algebra and Its Applications 132 (1990) 115-117. pdf
  • [J28] Gene H. Golub and Dianne P. O'Leary, ``Some history of the conjugate gradient and Lanczos algorithms: 1948-1976,'' SIAM Review 31 (1989) 50-102. pdf (part 1) pdf (part 2)
  • [J27] Dianne P. O'Leary, ``Some algorithms for approximating convolutions,'' Computer Vision, Graphics, and Image Processing 41 (1988) 333-345. pdf
  • [J26] Dianne P. O'Leary and G. W. Stewart, ``From determinacy to systaltic arrays,'' IEEE Transactions on Computers C-36 (1987) 1355-1359. pdf
  • [J25] Dianne P. O'Leary, ``A note on the capacitance matrix algorithm, substructuring, and mixed or Neumann boundary conditions,'' Applied Numerical Mathematics 3 (1987) 339-345. pdf
  • [J24] Dianne P. O'Leary, ``Parallel implementation of the block conjugate gradient algorithm,'' Parallel Computing 5 (1987) 127-139. pdf
  • [J23] Dianne P. O'Leary, ``Systolic arrays for matrix transpose and other reorderings,'' IEEE Transactions on Computers C-36 (1987) 117-122. pdf
  • [J22] Dianne P. O'Leary and G. W. Stewart, ``Assignment and scheduling in parallel matrix factorization,'' Linear Algebra and Its Applications 77 (1986) 275-300. pdf
  • [J21] Dianne P. O'Leary and B. W. Rust, ``Confidence intervals for inequality-constrained least squares problems, with applications to ill-posed problems,'' SIAM Journal on Scientific and Statistical Computing 7 (1986) 473-489. pdf
  • [J20] Dianne P. O'Leary and R. E. White, ``Multi-splittings of matrices and parallel solution of linear systems,'' SIAM Journal on Algebraic and Discrete Methods 6 (1985) 630-640. pdf
  • [J19] Dianne P. O'Leary and G. W. Stewart, ``Data-flow algorithms for parallel matrix computations,'' Communications of the ACM 28 (1985) 840-853. pdf
  • [J18] Dianne P. O'Leary, ``Ordering schemes for parallel processing of certain mesh problems,'' SIAM Journal on Scientific and Statistical Computing 5 (1984) 620-632. pdf
  • [J17] Dianne P. O'Leary and Shmuel Peleg, ``Analysis of relaxation processes: the two node, two label case,'' IEEE Transactions on Systems, Man, and Cybernetics SMC-13 (1983) 618-623. pdf
  • [J16] Dianne P. O'Leary and Shmuel Peleg, ``Digital image compression by outer product expansion,'' IEEE Transactions on Communications COM-31 (1983) 441-444. pdf
  • [J15] K. A. Narayanan, Dianne P. O'Leary, and Azriel Rosenfeld, ``Multi-resolution relaxation,'' Pattern Recognition 16 (1983) 223-230. pdf
  • [J14] K. A. Narayanan, Dianne P. O'Leary, and Azriel Rosenfeld, ``An optimization approach to edge reinforcement,'' IEEE Transactions on Systems, Man, and Cybernetics SMC-12 (1982) 551-553. pdf
  • [J13] K. A. Narayanan, Dianne P. O'Leary, and Azriel Rosenfeld, ``Image smoothing and segmentation by cost minimization,'' IEEE Transactions on Systems, Man, and Cybernetics SMC-12 (1982) 91-96. pdf
  • [J12] Dianne P. O'Leary, ``A discrete Newton algorithm for minimizing a function of many variables,'' Mathematical Programming 23 (1982) 20-33. pdf
  • [J11] Dianne P. O'Leary and John A. Simmons, ``A bidiagonalization- regularization procedure for large scale discretizations of ill-posed problems,'' SIAM J. on Scientific and Statistical Computing 2 (1981) 474-489. pdf
  • [J10] Dianne P. O'Leary and Olof Widlund, ``Algorithm 572: Solution of the Helmholtz equation for the Dirichlet problem on general bounded three dimensional regions,'' ACM Transactions on Mathematical Software 7 (1981) 239-246. http://portal.acm.org/citation.cfm?doid=355945.355954 pdf
  • [J09] Timothy J. O'Leary, Dianne P. O'Leary, Mary C. Habbersett, and Chester J. Herman, ``Classification of gynecologic flow cytometry data: a comparison of methods,'' J. of Analytical and Quantitative Cytology 3 (1981) 135-142. pdf
  • [J08] Dianne P. O'Leary, ``A generalized conjugate gradient algorithm for solving a class of quadratic programming problems,'' Linear Algebra and Its Applications Special Issue on Large Scale Matrix Problems 34 (1980) 371-399. Also in Large Scale Matrix Problems, A. Bjorck, R. J. Plemmons and H. Schneider, eds. North Holland Pub. Co. NY (1981) 391-399. pdf
  • [J07] Dianne P. O'Leary, ``Estimating matrix condition numbers,'' SIAM J. on Scientific and Statistical Computing 1 (1980) 205-209. pdf
  • [J06] Dianne P. O'Leary, ``The block conjugate gradient algorithm and related methods,'' Linear Algebra and Its Applications 29 (1980) 293-322. pdf
  • [J05] Dianne P. O'Leary, G. W. Stewart, and James S. Vandergraft, ``Estimating the largest eigenvalue of a positive definite matrix,'' Mathematics of Computation 33 (1979) 1289-1292. pdf
  • [J04] Dianne P. O'Leary and Olof Widlund, ``Capacitance matrix methods for the Helmholtz equation on general three dimensional regions,'' Mathematics of Computation 33 (1979) 849-879. pdf
  • [J03] Dianne P. O'Leary, ``Conjugate gradient algorithms in the solution of optimization problems for nonlinear elliptic partial differential equations,'' Computing 22 (1979) 59-77. pdf
  • [J02] Dianne P. O'Leary and Wei H. Yang, ``Elasto-plastic torsion by quadratic programming,'' Computer Methods in Applied Mechanics and Engineering 16 (1978) 361-368. pdf
  • [J01] Paul Concus, Gene H. Golub, and Dianne P. O'Leary, ``Numerical solution of nonlinear elliptic partial differential equations by a generalized conjugate gradient method,'' Computing 19 (1978) 321-339. pdf (part 1) and pdf (part 2)